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Structure and Function of ABC Transporters

Research Summary

Jue Chen studies the structure of proteins that use energy to transport solutes—necessary nutrients as well as unwanted toxins—across cell membranes. Determining how such transporters work will aid in understanding the basic mechanisms of active transport.

Research in my laboratory centers on structural and mechanistic studies of ATP-binding cassette (ABC) transporters. ABC transporters are ubiquitous membrane proteins that import or export molecules across the cellular membrane. In prokaryotes, these proteins are critical survival factors that function in the uptake of nutrients and in the secretion of toxins and antimicrobial agents. Humans have 48 different ABC transporters, and more than a dozen genetic diseases have been traced to ABC transporter defects. ABC transporters are also central to multidrug resistance in many pathogenic bacteria and tumor cells. Thus ABC transporters are a compelling class of proteins, both for their medical relevance and for basic membrane biology.

ABC transporters, both importers and exporters, contain two transmembrane domains, which form a substrate translocation pathway, and two nucleotide-binding domains (NBDs), which bind and hydrolyze ATP. In addition, many ABC importers require a periplasmic substrate-binding protein to stimulate their ATPase activity.

Figure 1: The maltose transport cycle...

ABC Importers
We use the maltose transporter (MalFGK2) from Escherichia coli as a model system to understand ABC importers. To construct the transport cycle, we determined the crystal structures of the maltose transporter in three distinct functional states. We obtained the inward-facing conformation, also known as the resting state, in which the transporter has very low ATPase activity, in the absence of maltose and nucleotides. The outward-facing conformation, corresponding to a catalytic intermediate in which ATP is poised for hydrolysis, was stabilized by the periplasmic maltose-binding protein and ATP. Finally, we captured a pretranslocation complex, which shows how substrates initiate the transport cycle, in the presence of the maltose-binding protein but in the absence of ATP. Then, to characterize the chemistry of ATP hydrolysis at an atomic level, we also determined crystal structures of the maltose transporter stabilized by ADP in conjunction with the phosphate analogues BeF3-, VO43-, and AlF4-at a resolution 2.2–2.4 Å. These phosphate analog structures mimic conformational states along the trajectory of ATP hydrolysis and demonstrate that ABC transporters catalyze ATP hydrolysis via a general base mechanism.

These results formed our current understanding of the ABC importer mechanism: In the absence of the substrate-binding protein, the transporter rests with the two NBDs well separated and the transport pathway open to the intracellular side (inward facing). This open configuration of the NBDs prevents uncoupled ATP hydrolysis despite the high intracellular concentration of ATP. Upon association of the substrate-binding protein on the extracellular side, the transporter undergoes a conformational change that brings the NBDs closer to each other—close enough to permit additional interactions between ATP and the protein, which in turn bring about a concerted motion that opens the transport pathway to the extracellular side (outward facing). Substrate is then released from the binding protein into the transport pathway. At the same time, ATP is poised for hydrolysis, which releases ADP and inorganic phosphate, returning the transporter to its resting, inward-facing conformation, and substrate is released to the intracellular side. The essence of this mechanism is that the very same protein conformational change that allows substrate entry from the extracellular side also enables ATP hydrolysis; thus these two events are tightly coupled.

ABC Exporters
In contrast to the case with ABC importers, very little is known about the exporters. For example, we have no information regarding how substrates are recognized and how ATP hydrolysis drives substrate release. To address these questions, we are studying several prokaryotic and eukaryotic exporters. Most recently, we determined the crystal structure of a multidrug transporter P-glycoprotein (P-gp) from Caenorhabditis elegans. P-gp confers multidrug resistance in cancer cells. It also affects the absorption, distribution, and clearance of drugs unrelated to cancer and of xenobiotics. The structure of the C. elegans protein provides an accurate model with which to interpret decades of functional and biochemical data on P-gp. Our functional data complement the crystal structure to support a picture in which P-gp uses the energy from ATP hydrolysis to expel lipophilic molecules from the inner leaflet of the membrane. We will make a long-term commitment to detailed structure/function studies of this important protein. We hope that this research will advance our understanding of the fundamental mechanisms underlying multidrug resistance and ultimately lead to novel therapeutic reagents for cancer treatment.

Part of this work was also supported by a grant from the National Institutes of Health.

As of September 06, 2012

Scientist Profile

Investigator
Purdue University
Biochemistry, Structural Biology